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    LOC111483960 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Cucurbita maxima (winter squash) ]

    Gene ID: 111483960, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111483960
    Gene description
    protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111483960 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272025.1 (5535141..5539271)

    NW_019272025.1Genomic Context describing neighboring genes Neighboring gene beta-1,6-galactosyltransferase GALT29A-like Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 3-like Neighboring gene uncharacterized LOC111483966 Neighboring gene uncharacterized LOC111483962 Neighboring gene rho GTPase-activating protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272025 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272025.1 Reference Cmax_1.0

      Range
      5535141..5539271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023130350.1 → XP_022986118.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

      UniProtKB/TrEMBL
      A0A6J1JFK3
      Conserved Domains (3) summary
      COG0464
      Location:117 → 351
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cd02678
      Location:4 → 77
      MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
      pfam09336
      Location:366 → 430
      Vps4_C; Vps4 C terminal oligomerization domain
    Nucleotide Protein
    Heading Accession and Version

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