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    LOC111480112 squamosa promoter-binding-like protein 7 [ Cucurbita maxima (winter squash) ]

    Gene ID: 111480112, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111480112
    Gene description
    squamosa promoter-binding-like protein 7
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111480112 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272021.1 (6745776..6747827, complement)

    NW_019272021.1Genomic Context describing neighboring genes Neighboring gene type III polyketide synthase A-like Neighboring gene malate dehydrogenase-like Neighboring gene uncharacterized LOC111479212 Neighboring gene CCR4-NOT transcription complex subunit 1-like Neighboring gene protein transport protein Sec61 subunit beta-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272021 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272021.1 Reference Cmax_1.0

      Range
      6745776..6747827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023125071.1 → XP_022980839.1  squamosa promoter-binding-like protein 7

      UniProtKB/TrEMBL
      A0A6J1J0C2
      Conserved Domains (1) summary
      pfam03110
      Location:147 → 221
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version

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