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    LOC111479219 polyadenylate-binding protein 2-like [ Cucurbita maxima (winter squash) ]

    Gene ID: 111479219, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111479219
    Gene description
    polyadenylate-binding protein 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111479219 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272017.1 (2450181..2454740)

    NW_019272017.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose flavonoid 3-O-glucosyltransferase 7-like Neighboring gene CBS domain-containing protein CBSX1, chloroplastic-like Neighboring gene 40S ribosomal protein S16-like Neighboring gene protein ALP1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272017 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272017.1 Reference Cmax_1.0

      Range
      2450181..2454740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023123773.1 → XP_022979541.1  polyadenylate-binding protein 2-like

      UniProtKB/TrEMBL
      A0A6J1IR25
      Conserved Domains (1) summary
      TIGR01628
      Location:30 → 626
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    Nucleotide Protein
    Heading Accession and Version

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