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    LOC111464374 probable phospholipid-transporting ATPase 4 [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111464374, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111464374
    Gene description
    probable phospholipid-transporting ATPase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111464374 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268546.1 (2105179..2110873, complement)

    NW_019268546.1Genomic Context describing neighboring genes Neighboring gene eukaryotic initiation factor 4A-11 Neighboring gene small nucleolar RNA snoR98 Neighboring gene uncharacterized LOC111464234 Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene 40S ribosomal protein S23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268546 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable phospholipid-transporting ATPase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268546.1 Reference Cmos_1.0

      Range
      2105179..2110873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023108562.1 → XP_022964330.1  probable phospholipid-transporting ATPase 4

      UniProtKB/TrEMBL
      A0A6J1HIL9
      Conserved Domains (1) summary
      TIGR01652
      Location:64 → 1171
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase

    2. XM_023108563.1 → XP_022964331.1  probable phospholipid-transporting ATPase 4

      UniProtKB/TrEMBL
      A0A6J1HIL9
      Conserved Domains (1) summary
      TIGR01652
      Location:64 → 1171
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    Nucleotide Protein
    Heading Accession and Version

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