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    LOC111458792 amino acid transporter AVT1J-like [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111458792, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111458792
    Gene description
    amino acid transporter AVT1J-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111458792 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268537.1 (2934495..2936630)

    NW_019268537.1Genomic Context describing neighboring genes Neighboring gene zinc-finger homeodomain protein 9-like Neighboring gene uncharacterized LOC111458795 Neighboring gene extracellular ribonuclease LE-like Neighboring gene ribonuclease 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268537 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid transporter AVT1J-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268537.1 Reference Cmos_1.0

      Range
      2934495..2936630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023101605.1 → XP_022957373.1  amino acid transporter AVT1J-like isoform X1

      UniProtKB/TrEMBL
      A0A6J1H012
      Conserved Domains (1) summary
      cl00456
      Location:15 → 397
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_023101606.1 → XP_022957374.1  amino acid transporter AVT1J-like isoform X2

      UniProtKB/TrEMBL
      A0A6J1H1R5
      Conserved Domains (1) summary
      cl00456
      Location:29 → 371
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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