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    LOC111454341 auxin response factor 17-like [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111454341, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111454341
    Gene description
    auxin response factor 17-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111454341 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268532.1 (654127..658521, complement)

    NW_019268532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111454348 Neighboring gene uncharacterized LOC111454346 Neighboring gene protein GrpE-like Neighboring gene probable eukaryotic translation initiation factor 5-1 Neighboring gene pollen-specific protein C13-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268532 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 17-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268532.1 Reference Cmos_1.0

      Range
      654127..658521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023095795.1 → XP_022951563.1  auxin response factor 17-like isoform X1

      UniProtKB/TrEMBL
      A0A6J1GI16
      Conserved Domains (2) summary
      pfam02362
      Location:106 → 208
      B3; B3 DNA binding domain
      pfam06507
      Location:272 → 345
      Auxin_resp; Auxin response factor

    2. XM_023095796.1 → XP_022951564.1  auxin response factor 17-like isoform X2

      UniProtKB/TrEMBL
      A0A6J1GJ58
      Conserved Domains (2) summary
      pfam02362
      Location:49 → 151
      B3; B3 DNA binding domain
      pfam06507
      Location:215 → 288
      Auxin_resp; Auxin response factor

    3. XM_023095794.1 → XP_022951562.1  auxin response factor 17-like isoform X1

      UniProtKB/TrEMBL
      A0A6J1GI16
      Conserved Domains (2) summary
      pfam02362
      Location:106 → 208
      B3; B3 DNA binding domain
      pfam06507
      Location:272 → 345
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version

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