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    LOC111451510 receptor-like protein kinase HERK 1 [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111451510, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111451510
    Gene description
    receptor-like protein kinase HERK 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111451510 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268529.1 (235122..239074, complement)

    NW_019268529.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CONSTANS-LIKE 14-like Neighboring gene uncharacterized LOC111450984 Neighboring gene uncharacterized LOC111450987 Neighboring gene probable NOT transcription complex subunit VIP2 Neighboring gene small nucleolar RNA snoR35 Neighboring gene probable NOT transcription complex subunit VIP2 Neighboring gene small nucleolar RNA snoR35

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268529 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane receptor protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein autophosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like protein kinase HERK 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268529.1 Reference Cmos_1.0

      Range
      235122..239074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023091967.1 → XP_022947735.1  receptor-like protein kinase HERK 1

      UniProtKB/TrEMBL
      A0A6J1G7R0
      Conserved Domains (2) summary
      cd14066
      Location:503 → 768
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      cl26302
      Location:35 → 386
      Malectin; Di-glucose binding within endoplasmic reticulum

    RNA

    1. XR_002712001.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases