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    Hcf Host cell factor [ Varroa jacobsoni ]

    Gene ID: 111272639, updated on 3-Jul-2024

    Summary

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    Gene symbol
    Hcf
    Gene description
    Host cell factor
    See related
    EnsemblRapid:LOC111272639
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varroa jacobsoni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
    Orthologs
    fruit fly all
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    Genomic context

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    See Hcf in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current vjacob_1.0 (GCF_002532875.1) Unplaced Scaffold NW_019214889.1 (155..12695, complement)

    NW_019214889.1Genomic Context describing neighboring genes Neighboring gene small ribonucleoprotein particle protein SmD2 Neighboring gene mitochondrial ribosomal protein L16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019214889 Unplaced Scaffold Reference vjacob_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varroa jacobsoni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference vjacob_1.0

    Genomic

    1. NW_019214889.1 Reference vjacob_1.0

      Range
      155..12695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022854212.1 → XP_022709947.1  host cell factor 1-like

      Related
      XP_022709947.1, XM_022854212.1
      Conserved Domains (5) summary
      cd00063
      Location:1478 → 1578
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:40 → 86
      Kelch; KELCH repeat [structural motif]
      pfam09606
      Location:542 → 925
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13854
      Location:325 → 365
      Kelch_5; Kelch motif
      cl26061
      Location:4 → 328
      PLN02193; nitrile-specifier protein
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases