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    kirrel3b kirre like nephrin family adhesion molecule 3b [ Seriola dumerili (greater amberjack) ]

    Gene ID: 111222551, updated on 15-Mar-2024

    Summary

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    Gene symbol
    kirrel3b
    Gene description
    kirre like nephrin family adhesion molecule 3b
    See related
    Ensembl:ENSSDUG00000005282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola dumerili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Also known as
    kirrel3
    Orthologs
    zebrafish all
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    Genomic context

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    See kirrel3b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174357.1 (310215..466723)

    NW_019174357.1Genomic Context describing neighboring genes Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1 Neighboring gene somatolactin alpha Neighboring gene BARX homeobox 2 Neighboring gene RNA binding motif protein 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019174357 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kin of IRRE-like protein 3
    Names
    kirre like nephrin family adhesion molecule 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sdu_1.0 Primary Assembly

    Genomic

    1. NW_019174357.1 Reference Sdu_1.0 Primary Assembly

      Range
      310215..466723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022746322.1 → XP_022602043.1  kin of IRRE-like protein 3

      UniProtKB/TrEMBL
      A0A3B4TN38
      Related
      ENSSDUP00000007210.1, ENSSDUT00000007348.1
      Conserved Domains (5) summary
      cd05759
      Location:135 → 216
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      cd05898
      Location:388 → 485
      Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
      smart00410
      Location:24 → 113
      IG_like; Immunoglobulin like
      pfam13895
      Location:224 → 301
      Ig_2; Immunoglobulin domain
      cl28434
      Location:305 → 386
      I-set; Immunoglobulin I-set domain
    Nucleotide Protein
    Heading Accession and Version

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