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    LOC111007341 squamosa promoter-binding-like protein 6 [ Momordica charantia (bitter melon) ]

    Gene ID: 111007341, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111007341
    Gene description
    squamosa promoter-binding-like protein 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Momordica charantia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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    Genomic context

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    See LOC111007341 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104494.1 (2025437..2032069, complement)

    NW_019104494.1Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 4 Neighboring gene uncharacterized LOC111007346 Neighboring gene alpha-1,4-glucan-protein synthase [UDP-forming]-like Neighboring gene universal stress protein PHOS32-like Neighboring gene probable galacturonosyltransferase 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019104494 Unplaced Scaffold Reference ASM199503v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM199503v1

    Genomic

    1. NW_019104494.1 Reference ASM199503v1

      Range
      2025437..2032069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022279685.1 → XP_022135377.1  squamosa promoter-binding-like protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A6J1C0X9
      Conserved Domains (1) summary
      pfam03110
      Location:175 → 249
      SBP; SBP domain

    2. XM_022279684.1 → XP_022135376.1  squamosa promoter-binding-like protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A6J1C0X9
      Conserved Domains (1) summary
      pfam03110
      Location:175 → 249
      SBP; SBP domain

    3. XM_022279686.1 → XP_022135378.1  squamosa promoter-binding-like protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A6J1C4M9
      Conserved Domains (1) summary
      pfam03110
      Location:175 → 249
      SBP; SBP domain

    4. XM_022279683.1 → XP_022135375.1  squamosa promoter-binding-like protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A6J1C0X9
      Conserved Domains (1) summary
      pfam03110
      Location:175 → 249
      SBP; SBP domain
    Nucleotide Protein Strain
    Heading Accession and Version

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