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    CAMTA1-DT CAMTA1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 110841581, updated on 1-Oct-2024

    Summary

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    Official Symbol
    CAMTA1-DTprovided by HGNC
    Official Full Name
    CAMTA1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53020
    See related
    AllianceGenome:HGNC:53020
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    lncCAMTA1
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    Genomic context

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    See CAMTA1-DT in Genome Data Viewer
    Location:
    1p36.31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (6783892..6784980, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (6311732..6312820, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (6843952..6845040, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene long intergenic non-protein coding RNA 1672 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:6843880-6844556 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:6844557-6845231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 177 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 178 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6868944-6869444 Neighboring gene uncharacterized LOC124903832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6927405-6928137 Neighboring gene calmodulin binding transcription activator 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969150-6969650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6967713-6968438 Neighboring gene ribosomal protein L37 pseudogene 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969651-6970151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6990406-6990906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7011017-7011720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7016017-7016546 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7016547-7017077 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7017078-7017607 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 181 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7029419-7029919 Neighboring gene MPRA-validated peak33 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7039565-7040410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 183 Neighboring gene CAMTA1 antisense RNA 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long Noncoding RNA CAMTA1 Promotes Proliferation and Mobility of the Human Breast Cancer Cell Line MDA-MB-231 via Targeting miR-20b. Lu P, et al. Oncol Res, 2018 May 7. PMID 28550685, Free PMC Article
    2. Long Noncoding RNA lncCAMTA1 Promotes Proliferation and Cancer Stem Cell-Like Properties of Liver Cancer by Inhibiting CAMTA1. Ding LJ, et al. Int J Mol Sci, 2016 Sep 23. PMID 27669232, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149049.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BM670173, HY064228

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      6783892..6784980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      6311732..6312820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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