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    LOC110707252 nuclear transcription factor Y subunit A-4-like [ Chenopodium quinoa (quinoa) ]

    Gene ID: 110707252, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110707252
    Gene description
    nuclear transcription factor Y subunit A-4-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chenopodium quinoa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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    Genomic context

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    See LOC110707252 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ASM168347v1 (GCF_001683475.1) Unplaced Scaffold NW_018744996.1 (1445746..1461694)

    NW_018744996.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 Neighboring gene uncharacterized LOC110707157 Neighboring gene uncharacterized LOC110707158 Neighboring gene uncharacterized LOC110707118

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018744996 Unplaced Scaffold Reference ASM168347v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit A-4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chenopodium quinoa Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM168347v1 Primary Assembly

    Genomic

    1. NW_018744996.1 Reference ASM168347v1 Primary Assembly

      Range
      1445746..1461694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021885270.1 → XP_021740962.1  nuclear transcription factor Y subunit A-4-like

      Conserved Domains (1) summary
      pfam02045
      Location:134 → 189
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
    Nucleotide Protein
    Heading Accession and Version

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