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    LOC110520121 acetylcholine receptor subunit alpha [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110520121, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110520121
    Gene description
    acetylcholine receptor subunit alpha
    See related
    Ensembl:ENSOMYG00000022578
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC110520121 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (49895327..49901575, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (53033232..53039258, complement)

    Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene secernin-3-like Neighboring gene G protein-coupled receptor 155a Neighboring gene N-chimaerin Neighboring gene activating transcription factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine-gated monoatomic cation-selective channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylcholine receptor subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      49895327..49901575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021597196.2 → XP_021452871.1  acetylcholine receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A060YKB0, A0A8C7REG6
      Related
      ENSOMYP00000051159.2, ENSOMYT00000055622.2
      Conserved Domains (2) summary
      pfam02931
      Location:24 → 231
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:238 → 446
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

    2. XM_036974448.1 → XP_036830343.1  acetylcholine receptor subunit alpha isoform X2

      UniProtKB/TrEMBL
      A0A8C7RIH8
      Related
      ENSOMYP00000051181.2, ENSOMYT00000055644.2
      Conserved Domains (2) summary
      TIGR00860
      Location:22 → 445
      LIC; Cation transporter family protein
      cd19014
      Location:20 → 229
      LGIC_ECD_nAChR_A1; extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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