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    LOC110507951 galactose-3-O-sulfotransferase 2 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110507951, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110507951
    Gene description
    galactose-3-O-sulfotransferase 2
    See related
    Ensembl:ENSOMYG00000037185
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC110507951 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 27 NC_048591.1 (31853996..31868300)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 27 NC_035103.1 (30887624..30902296, complement)

    Chromosome 27 - NC_048591.1Genomic Context describing neighboring genes Neighboring gene EF-hand domain family, member D1 Neighboring gene potassium inwardly rectifying channel subfamily J member 13 Neighboring gene uncharacterized LOC118944767 Neighboring gene variant surface antigen E-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactosylceramide sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactose-3-O-sulfotransferase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048591.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      31853996..31868300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021588374.2 → XP_021444049.2  galactose-3-O-sulfotransferase 2

      UniProtKB/TrEMBL
      A0A8C7TE98, A0A8C7THK6
      Related
      ENSOMYP00000080280.2, ENSOMYT00000087494.2
      Conserved Domains (1) summary
      cl22970
      Location:249 → 591
      Sulfotransfer_2; Sulfotransferase family
    Nucleotide Protein
    Heading Accession and Version

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