U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC110485554 beta-1,3-galactosyltransferase 2 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110485554, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC110485554
    Gene description
    beta-1,3-galactosyltransferase 2
    See related
    Ensembl:ENSOMYG00000003527
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC110485554 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (11425756..11429422, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (6419916..6423496)

    Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily A member 3, mitochondrial Neighboring gene uncharacterized LOC118938432 Neighboring gene vasorin Neighboring gene beta-1,3-galactosyltransferase 2-like Neighboring gene zinc finger protein GLIS2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    beta-1,3-galactosyltransferase 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      11425756..11429422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021556653.2 → XP_021412328.2  beta-1,3-galactosyltransferase 2

      UniProtKB/TrEMBL
      A0A8C7M0D6
      Related
      ENSOMYP00000006793.2, ENSOMYT00000007543.2
      Conserved Domains (1) summary
      cl21608
      Location:122 → 316
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases