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    LOC110335782 H-2 class II histocompatibility antigen, E-K alpha chain [ Mus pahari (shrew mouse) ]

    Gene ID: 110335782, updated on 15-Mar-2024

    Summary

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    Gene symbol
    LOC110335782
    Gene description
    H-2 class II histocompatibility antigen, E-K alpha chain
    See related
    Ensembl:MGP_PahariEiJ_G0035318
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus pahari
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
    Orthologs
    human all
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    Genomic context

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    See LOC110335782 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 18 NC_034607.1 (2252765..2257974, complement)

    Chromosome 18 - NC_034607.1Genomic Context describing neighboring genes Neighboring gene H-2 class II histocompatibility antigen, I-E beta chain-like Neighboring gene synaptojanin-2-binding protein pseudogene Neighboring gene small nucleolar RNA SNORA40 Neighboring gene butyrophilin like 2 Neighboring gene butyrophilin-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034607.1 Chromosome 18 Reference PAHARI_EIJ_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables MHC class II protein complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptide antigen assembly with MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    H-2 class II histocompatibility antigen, E-K alpha chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAHARI_EIJ_v1.1

    Genomic

    1. NC_034607.1 Reference PAHARI_EIJ_v1.1

      Range
      2252765..2257974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021218132.2 → XP_021073791.1  H-2 class II histocompatibility antigen, E-K alpha chain

      Related
      MGP_PahariEiJ_T0094490.1
      Conserved Domains (3) summary
      cd05767
      Location:111 → 204
      IgC_MHC_II_alpha; Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00993
      Location:29 → 107
      MHC_II_alpha; Class II histocompatibility antigen, alpha domain
      pfam16196
      Location:201 → 254
      C1-set_C; C1-set C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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