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    Chrne cholinergic receptor nicotinic epsilon subunit [ Mus pahari (shrew mouse) ]

    Gene ID: 110332307, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Chrne
    Gene description
    cholinergic receptor nicotinic epsilon subunit
    See related
    Ensembl:MGP_PahariEiJ_G0017771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus pahari
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
    Orthologs
    human mouse all
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    Genomic context

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    See Chrne in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 14 NC_034603.1 (38452591..38456913, complement)

    Chromosome 14 - NC_034603.1Genomic Context describing neighboring genes Neighboring gene phospholipase D2 Neighboring gene misshapen like kinase 1 Neighboring gene chromosome 14 C17orf107 homolog Neighboring gene glycoprotein Ib platelet subunit alpha Neighboring gene solute carrier family 25 member 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034603.1 Chromosome 14 Reference PAHARI_EIJ_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine-gated monoatomic cation-selective channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylcholine receptor subunit epsilon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAHARI_EIJ_v1.1

    Genomic

    1. NC_034603.1 Reference PAHARI_EIJ_v1.1

      Range
      38452591..38456913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021213457.1 → XP_021069116.1  acetylcholine receptor subunit epsilon

      Related
      MGP_PahariEiJ_P0034618, MGP_PahariEiJ_T0034618.1
      Conserved Domains (2) summary
      pfam02931
      Location:24 → 240
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:247 → 474
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
    Nucleotide Protein
    Heading Accession and Version

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