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    LOC109767392 protein CUP-SHAPED COTYLEDON 2 [ Aegilops tauschii ]

    Gene ID: 109767392, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC109767392
    Gene description
    protein CUP-SHAPED COTYLEDON 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aegilops tauschii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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    Genomic context

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    See LOC109767392 in Genome Data Viewer
    Location:
    chromosome: 4D
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Aet v5.0 (GCF_002575655.2) 4D NC_053038.2 (48712095..48714268, complement)
    101 previous assembly Aet v4.0 (GCF_002575655.1) 4D NC_053038.1 (48751564..48753737, complement)

    Chromosome 4D - NC_053038.2Genomic Context describing neighboring genes Neighboring gene protein JINGUBANG Neighboring gene protein JINGUBANG Neighboring gene probable transcription factor RL9 Neighboring gene uncharacterized LOC109775599

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CUP-SHAPED COTYLEDON 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aet v5.0 Primary Assembly

    Genomic

    1. NC_053038.2 Reference Aet v5.0 Primary Assembly

      Range
      48712095..48714268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020326146.2 → XP_020181735.1  protein CUP-SHAPED COTYLEDON 2

      UniProtKB/TrEMBL
      A0A453HCV2, R7WCZ5
      Conserved Domains (1) summary
      pfam02365
      Location:6 → 130
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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