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    LOC109758527 agamous-like MADS-box protein AGL61 [ Aegilops tauschii ]

    Gene ID: 109758527, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC109758527
    Gene description
    agamous-like MADS-box protein AGL61
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aegilops tauschii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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    Genomic context

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    See LOC109758527 in Genome Data Viewer
    Location:
    chromosome: 3D
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Aet v5.0 (GCF_002575655.2) 3D NC_053037.2 (623234108..623236696, complement)
    101 previous assembly Aet v4.0 (GCF_002575655.1) 3D NC_053037.1 (622978675..622981263, complement)

    Chromosome 3D - NC_053037.2Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein Neighboring gene L10-interacting MYB domain-containing protein-like Neighboring gene wall-associated receptor kinase 2 Neighboring gene pectin acetylesterase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agamous-like MADS-box protein AGL61

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aet v5.0 Primary Assembly

    Genomic

    1. NC_053037.2 Reference Aet v5.0 Primary Assembly

      Range
      623234108..623236696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020317388.2 → XP_020172977.1  agamous-like MADS-box protein AGL61

      UniProtKB/TrEMBL
      M8D135
      Conserved Domains (1) summary
      cl00109
      Location:11 → 85
      MADS; MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ ...
    Nucleotide Protein
    Heading Accession and Version

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