U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC109722013 probable WRKY transcription factor 75 [ Ananas comosus (pineapple) ]

    Gene ID: 109722013, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC109722013
    Gene description
    probable WRKY transcription factor 75
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ananas comosus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Bromeliaceae; Bromelioideae; Ananas
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC109722013 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly LG Location
    100 current ASM154086v1 (GCF_001540865.1) 16 NC_033636.1 (10528548..10530369, complement)

    Linkage Group 16 - NC_033636.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109722502 Neighboring gene protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like Neighboring gene uncharacterized LOC109722492 Neighboring gene myosin-17-like Neighboring gene histone-lysine N-methyltransferase 2B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_033636.1 Chromosome 16 Reference ASM154086v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable WRKY transcription factor 75

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Ananas comosus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM154086v1 Primary Assembly

    Genomic

    1. NC_033636.1 Reference ASM154086v1 Primary Assembly

      Range
      10528548..10530369 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020249854.1 → XP_020105443.1  probable WRKY transcription factor 75 isoform X1

      UniProtKB/TrEMBL
      A0A6P5GHF0, A0A6V7P070
      Conserved Domains (1) summary
      smart00774
      Location:100 → 157
      WRKY; DNA binding domain

    2. XM_020249855.1 → XP_020105444.1  probable WRKY transcription factor 75 isoform X2

      UniProtKB/TrEMBL
      A0A6P5GBB8, A0A6V7P070
      Conserved Domains (1) summary
      smart00774
      Location:98 → 155
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases