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    LOC109683541 ATP-dependent RNA helicase DDX55 [ Castor canadensis (American beaver) ]

    Gene ID: 109683541, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC109683541
    Gene description
    ATP-dependent RNA helicase DDX55
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Castor canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
    Also known as
    DDX55
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC109683541 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870130.1 (807654..816609, complement)

    NW_017870130.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type containing 8 Neighboring gene eukaryotic translation initiation factor 2B subunit alpha

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017870130.1 Unplaced Scaffold Reference C.can genome v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX55

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.can genome v1.0

    Genomic

    1. NW_017870130.1 Reference C.can genome v1.0

      Range
      807654..816609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020159474.1 → XP_020015063.1  ATP-dependent RNA helicase DDX55

      UniProtKB/TrEMBL
      A0A250Y379, A0A8B7U5P8
      Conserved Domains (2) summary
      COG0513
      Location:2 → 377
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam13959
      Location:403 → 462
      DUF4217; Domain of unknown function (DUF4217)
    Nucleotide Protein
    Heading Accession and Version

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