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    PTPMT1 protein tyrosine phosphatase, mitochondrial 1 [ Ooceraea biroi (clonal raider ant) ]

    Gene ID: 109610640, updated on 10-Oct-2024

    Summary

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    Gene symbol
    PTPMT1
    Gene description
    protein tyrosine phosphatase, mitochondrial 1
    Locus tag
    DMN91_012946
    See related
    EnsemblRapid:LOC109610640
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ooceraea biroi
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See PTPMT1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Obir_v5.4 (GCF_003672135.1) 14 NC_039519.1 (2270671..2311870, complement)

    Chromosome 14 - NC_039519.1Genomic Context describing neighboring genes Neighboring gene neprilysin Neighboring gene alpha- and gamma-adaptin-binding protein p34 Neighboring gene alanine--tRNA ligase, mitochondrial Neighboring gene syntaxin-binding protein tomosyn Neighboring gene uncharacterized LOC105286622 Neighboring gene zinc finger protein Elbow

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039519.1 Chromosome 14 Reference Obir_v5.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylglycerophosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTPase grn1; mitochondrial GTPase 1; phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1
    Names
    Protein-tyrosine phosphatase mitochondrial 1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Obir_v5.4

    Genomic

    1. NC_039519.1 Reference Obir_v5.4

      Range
      2270671..2311870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011351673.2 → XP_011349975.1  phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 isoform X3

      See identical proteins and their annotated locations for XP_011349975.1

      UniProtKB/TrEMBL
      A0A3L8D487
      Related
      XP_011349975.1, XM_011351673.2
      Conserved Domains (1) summary
      cl21483
      Location:44 → 194
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

    2. XM_026975028.1 → XP_026830829.1  GTPase grn1 isoform X4

      Related
      XP_026830829.1, XM_026975028.1
      Conserved Domains (2) summary
      cd01856
      Location:24 → 201
      YlqF; Circularly permuted YlqF GTPase
      cl21483
      Location:247 → 397
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

    3. XM_020034040.2 → XP_019889599.1  phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 isoform X2

      UniProtKB/TrEMBL
      A0A026VUG6
      Related
      XP_019889599.1, XM_020034040.2
      Conserved Domains (1) summary
      cl21483
      Location:51 → 201
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

    4. XM_011351675.2 → XP_011349977.1  phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 isoform X3

      See identical proteins and their annotated locations for XP_011349977.1

      UniProtKB/TrEMBL
      A0A3L8D487
      Related
      XP_011349977.1, XM_011351675.2
      Conserved Domains (1) summary
      cl21483
      Location:44 → 194
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

    5. XM_020034039.2 → XP_019889598.1  mitochondrial GTPase 1 isoform X1

      UniProtKB/TrEMBL
      A0A3L8D3T5
      Related
      XP_019889598.1, XM_020034039.2
      Conserved Domains (1) summary
      cl26335
      Location:22 → 314
      RbgA; Ribosome biogenesis GTPase A [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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