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    LOC109594905 very low-density lipoprotein receptor [ Aethina tumida (small hive beetle) ]

    Gene ID: 109594905, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC109594905
    Gene description
    very low-density lipoprotein receptor
    See related
    EnsemblRapid:ENSATDG00005000650
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aethina tumida
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Nitidulidae; Nitidulinae; Aethina
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    Genomic context

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    See LOC109594905 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current icAetTumi1.1 (GCF_024364675.1) 1 NC_065435.1 (6072927..6139983, complement)
    100 previous assembly Atum_1.0 (GCF_001937115.1) Unplaced Scaffold NW_017852991.1 (474608..540655, complement)

    Chromosome 1 - NC_065435.1Genomic Context describing neighboring genes Neighboring gene dual oxidase-like Neighboring gene Ca[2+] channel Muscle-specific alpha2/delta subunit Neighboring gene dual oxidase 2-like Neighboring gene protein shifted Neighboring gene electron transfer flavoprotein subunit alpha wal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very low-density lipoprotein receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aethina tumida Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icAetTumi1.1 Primary Assembly

    Genomic

    1. NC_065435.1 Reference icAetTumi1.1 Primary Assembly

      Range
      6072927..6139983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_049962519.1 → XP_049818476.1  very low-density lipoprotein receptor isoform X3

    2. XM_049962515.1 → XP_049818472.1  very low-density lipoprotein receptor isoform X1

    3. XM_020010169.2 → XP_019865728.1  very low-density lipoprotein receptor isoform X2

      Related
      ENSATDP00005001076.1, ENSATDT00005001096.1
      Conserved Domains (7) summary
      smart00192
      Location:37 → 68
      LDLa; Low-density lipoprotein receptor domain class A
      smart00135
      Location:514 → 556
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:404 → 438
      EGF_CA; Calcium-binding EGF-like domain
      cd00112
      Location:160 → 194
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      pfam00057
      Location:197 → 233
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:490 → 530
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:368 → 402
      FXa_inhibition; Coagulation Factor Xa inhibitory site

    4. XM_049962524.1 → XP_049818481.1  very low-density lipoprotein receptor isoform X4

      Related
      ENSATDP00005001059.1, ENSATDT00005001079.1
    Nucleotide Protein
    Heading Accession and Version

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