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    LOC109121468 tropinone reductase homolog At5g06060-like [ Vitis vinifera (wine grape) ]

    Gene ID: 109121468, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC109121468
    Gene description
    tropinone reductase homolog At5g06060-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC109121468 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (6252801..6266126)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (6228456..6230182)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene tropinone reductase homolog At5g06060 Neighboring gene tropinone reductase homolog At2g29150 Neighboring gene uncharacterized LOC104879614 Neighboring gene tropinone reductase homolog At5g06060

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tropinone reductase homolog At5g06060-like; uncharacterized protein LOC109121468

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      6252801..6266126
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019220545.2 → XP_019076090.1  tropinone reductase homolog At5g06060-like isoform X2

      UniProtKB/TrEMBL
      D7SK92

    2. XM_019220541.2 → XP_019076086.2  uncharacterized protein LOC109121468 isoform X3

    3. XM_010652687.3 → XP_010650989.1  tropinone reductase homolog At5g06060-like isoform X1

      See identical proteins and their annotated locations for XP_010650989.1

      UniProtKB/TrEMBL
      A5AYP2, D7SK90

    4. XM_019220549.2 → XP_019076094.1  tropinone reductase homolog At5g06060-like isoform X1

      UniProtKB/TrEMBL
      A5AYP2, D7SK90
    Nucleotide Protein
    Heading Accession and Version

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