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    LOC109075447 proteasome subunit beta type-2-like [ Cyprinus carpio (common carp) ]

    Gene ID: 109075447, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109075447
    Gene description
    proteasome subunit beta type-2-like
    See related
    Ensembl:ENSCCRG00000043213
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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    Genomic context

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    See LOC109075447 in Genome Data Viewer
    Location:
    chromosome: A19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) A19 NC_056590.1 (23826614..23834105, complement)
    100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017540951.1 (370680..379115, complement)

    Chromosome A19 - NC_056590.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 30-like Neighboring gene neurochondrin-like Neighboring gene transcription factor AP-2-epsilon Neighboring gene UPF0500 protein C1orf216 homolog Neighboring gene claspin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, beta-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit beta type-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056590.1 Reference ASM1834038v1 Primary Assembly

      Range
      23826614..23834105 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019091356.2 → XP_018946901.2  proteasome subunit beta type-2-like

      UniProtKB/TrEMBL
      A0A8C1F5B6, A0A8C1GFB6, A0A9Q9ZFU4
      Conserved Domains (1) summary
      cd03758
      Location:1 → 192
      proteasome_beta_type_2; proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...
    Nucleotide Protein
    Heading Accession and Version

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