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    LOC109073961 acetylcholine receptor subunit alpha-like [ Cyprinus carpio (common carp) ]

    Gene ID: 109073961, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109073961
    Gene description
    acetylcholine receptor subunit alpha-like
    See related
    Ensembl:ENSCCRG00000051031
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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    Genomic context

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    See LOC109073961 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) Unplaced Scaffold NW_024879259.1 (3475..8310, complement)
    100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017540494.1 (829777..834143, complement)

    NW_024879259.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C3, mitochondrial-like Neighboring gene lunapark, ER junction formation factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine-gated monoatomic cation-selective channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylcholine receptor subunit alpha-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NW_024879259.1 Reference ASM1834038v1 Primary Assembly

      Range
      3475..8310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019090037.2 → XP_018945582.2  acetylcholine receptor subunit alpha-like

      UniProtKB/TrEMBL
      A0A8C1M7D3, A0A8C2GU76
      Conserved Domains (2) summary
      TIGR00860
      Location:21 → 447
      LIC; Cation transporter family protein
      cd19014
      Location:22 → 231
      LGIC_ECD_nAChR_A1; extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)
    Nucleotide Protein
    Heading Accession and Version

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