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    LOC109016475 60S ribosomal protein L23 [ Juglans regia (English walnut) ]

    Gene ID: 109016475, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC109016475
    Gene description
    60S ribosomal protein L23
    Locus tag
    F2P56_015830
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Juglans regia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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    Genomic context

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    See LOC109016475 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Walnut 2.0 (GCF_001411555.2) 7 NC_049907.1 (38638730..38642515)
    100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017406675.1 (1429..2028, complement)

    Chromosome 7 - NC_049907.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109019524 Neighboring gene uncharacterized LOC108983015 Neighboring gene peroxygenase-like Neighboring gene eukaryotic translation initiation factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables large ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Walnut 2.0 Primary Assembly

    Genomic

    1. NC_049907.1 Reference Walnut 2.0 Primary Assembly

      Range
      38638730..38642515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035692457.1 → XP_035548350.1  60S ribosomal protein L23

      UniProtKB/TrEMBL
      A0A2I4DL36, A0A833XG65
      Conserved Domains (1) summary
      PTZ00054
      Location:2 → 140
      PTZ00054; 60S ribosomal protein L23; Provisional
    Nucleotide Protein
    Heading Accession and Version

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