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    abcd2.L ATP binding cassette subfamily D member 2 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108711173, updated on 4-Nov-2024

    Summary

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    Official Symbol
    abcd2.L
    Official Full Name
    ATP binding cassette subfamily D member 2 L homeolog
    Primary source
    Xenbase:XB-GENE-17341748
    Locus tag
    XELAEV_18017725mg
    See related
    EnsemblRapid:ENSXLAG00005031607 AllianceGenome:Xenbase:XB-GENE-17341748
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    aldr; abc39; aldl1; aldrp
    Summary
    Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and long-chain fatty acid transmembrane transporter activity. Predicted to act upstream of or within fatty acid catabolic process; long-chain fatty acid import into peroxisome; and peroxisome organization. Predicted to be located in peroxisomal membrane. Orthologous to human ABCD2 (ATP binding cassette subfamily D member 2). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See abcd2.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (81703260..81734876, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (66360649..66391304, complement)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108711172 Neighboring gene kinesin family member 21A L homeolog Neighboring gene uncharacterized LOC121401508 Neighboring gene regulator of DNA class I crossover intermediates 1 L homeolog Neighboring gene solute carrier family 2 member 13 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables long-chain fatty acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within long-chain fatty acid import into peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within peroxisome organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within very long-chain fatty acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family D member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      81703260..81734876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018252628.2 → XP_018108117.1  ATP-binding cassette sub-family D member 2

      UniProtKB/TrEMBL
      A0A1L8GZ34, A0A974DC22
      Related
      ENSXLAP00005094690.1, ENSXLAT00005096392.1
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases