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    LOC108227547 nuclear transcription factor Y subunit A-1 [ Daucus carota subsp. sativus ]

    Gene ID: 108227547, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC108227547
    Gene description
    nuclear transcription factor Y subunit A-1
    Locus tag
    DCAR_002074
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Daucus carota subsp. sativus (sub-species: sativus)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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    Genomic context

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    See LOC108227547 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 1 NC_030381.2 (30702978..30710367)
    100 previous assembly ASM162521v1 (GCF_001625215.1) 1 NC_030381.1 (24808821..24816153)

    Chromosome 1 - NC_030381.2Genomic Context describing neighboring genes Neighboring gene chaperonin-like RbcX protein 2, chloroplastic Neighboring gene uncharacterized LOC108227370 Neighboring gene calcium-dependent protein kinase 8 Neighboring gene uncharacterized LOC135147091

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit A-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DH1 v3.0 Primary Assembly

    Genomic

    1. NC_030381.2 Reference DH1 v3.0 Primary Assembly

      Range
      30702978..30710367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064079576.1 → XP_063935646.1  nuclear transcription factor Y subunit A-1 isoform X3

    2. XM_064079565.1 → XP_063935635.1  nuclear transcription factor Y subunit A-1 isoform X1

    3. XM_064079566.1 → XP_063935636.1  nuclear transcription factor Y subunit A-1 isoform X2

    4. XM_064079581.1 → XP_063935651.1  nuclear transcription factor Y subunit A-1 isoform X4

    5. XM_017402764.2 → XP_017258253.1  nuclear transcription factor Y subunit A-1 isoform X5

      UniProtKB/TrEMBL
      A0AAF0W5Y9

    6. XM_017402755.2 → XP_017258244.1  nuclear transcription factor Y subunit A-1 isoform X5

      UniProtKB/TrEMBL
      A0AAF0W5Y9
    Nucleotide Protein
    Heading Accession and Version

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