U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC107949768 dof zinc finger protein DOF5.4 [ Gossypium hirsutum (cotton) ]

    Gene ID: 107949768, updated on 12-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107949768
    Gene description
    dof zinc finger protein DOF5.4
    Locus tag
    ERO13_D03G098000v2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium hirsutum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC107949768 in Genome Data Viewer
    Location:
    chromosome: D03
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D03 NC_053439.1 (39551639..39553316, complement)

    Chromosome D03 - NC_053439.1Genomic Context describing neighboring genes Neighboring gene ADP,ATP carrier protein ER-ANT1 Neighboring gene truncated transcription factor CAULIFLOWER A Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107949909

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_053439.1 Chromosome D03 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    dof zinc finger protein DOF5.4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Genomic

    1. NC_053439.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

      Range
      39551639..39553316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016884520.2 → XP_016740009.1  dof zinc finger protein DOF5.4

      UniProtKB/TrEMBL
      A0A1U8HKW7, A0A1U8NPW7
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases