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    LOC107897771 caffeoylshikimate esterase [ Gossypium hirsutum (cotton) ]

    Gene ID: 107897771, updated on 12-Aug-2024

    Summary

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    Gene symbol
    LOC107897771
    Gene description
    caffeoylshikimate esterase
    Locus tag
    ERO13_A10G210500v2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium hirsutum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC107897771 in Genome Data Viewer
    Location:
    chromosome: A10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A10 NC_053433.1 (112551337..112555263)

    Chromosome A10 - NC_053433.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35 Neighboring gene caffeoylshikimate esterase Neighboring gene probable prefoldin subunit 2 Neighboring gene spliceosome-associated protein 130 A Neighboring gene dirigent protein 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053433.1 Chromosome A10 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoylshikimate esterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Genomic

    1. NC_053433.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

      Range
      112551337..112555263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016823341.2 → XP_016678830.2  caffeoylshikimate esterase

      UniProtKB/TrEMBL
      A0A1U8IL15
      Conserved Domains (1) summary
      cl21494
      Location:6 → 299
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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