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    LOC107871006 profilin [ Capsicum annuum ]

    Gene ID: 107871006, updated on 12-May-2024

    Summary

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    Gene symbol
    LOC107871006
    Gene description
    profilin
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Capsicum annuum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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    Genomic context

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    See LOC107871006 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current UCD10Xv1.1 (GCF_002878395.1) 11 NC_061121.1 (234929295..234937400, complement)
    100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 5 NC_029981.1 (175794197..175799298, complement)

    Chromosome 11 - NC_061121.1Genomic Context describing neighboring genes Neighboring gene histidine-containing phosphotransfer protein 4 Neighboring gene cell division control protein 2 homolog A Neighboring gene vacuolar protein sorting-associated protein 32 homolog 2 Neighboring gene clathrin interactor EPSIN 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and molecular and immunological characterisation of two new food allergens, Cap a 2 and Lyc e 1, profilins from bell pepper (Capsicum annuum) and Tomato (Lycopersicon esculentum). Willerroider M, et al. Int Arch Allergy Immunol, 2003 Aug. PMID 12915767
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin monomer binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sequestering of actin monomers IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    profilin
    Names
    Minor food allergen Cap a 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398349.1 → NP_001385278.1  profilin

      Status: VALIDATED

      Source sequence(s)
      AJ417552, GAXU01001432, GAXU01025516, NPHV01000011
      Conserved Domains (1) summary
      pfam00235
      Location:1 → 128
      Profilin

    RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCD10Xv1.1 Primary Assembly

    Genomic

    1. NC_061121.1 Reference UCD10Xv1.1 Primary Assembly

      Range
      234929295..234937400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YI9.1 GenPept UniProtKB/Swiss-Prot:Q93YI9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases