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    LOC107852315 probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [ Capsicum annuum ]

    Gene ID: 107852315, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC107852315
    Gene description
    probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Capsicum annuum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
    Also known as
    DXS; DXPS; TKT2; CapTKT2
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    Genomic context

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    See LOC107852315 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current UCD10Xv1.1 (GCF_002878395.1) 1 NC_061111.1 (180765437..180770616)
    100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) Unplaced Scaffold NW_015960464.1 (525661..530406, complement)

    Chromosome 1 - NC_061111.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107852313 Neighboring gene uncharacterized LOC124898651 Neighboring gene uncharacterized LOC107852316 Neighboring gene em protein H5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dedicated roles of plastid transketolases during the early onset of isoprenoid biogenesis in pepper fruits1. Bouvier F, et al. Plant Physiol, 1998 Aug. PMID 9701598, Free PMC Article
    2. Bioinformatics study of 1-deoxy-D-xylulose-5-phosphate synthase (DXS) genes in Solanaceae. Pan X, et al. Mol Biol Rep, 2019 Oct. PMID 31313133
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
    Names
    1-deoxyxylulose-5-phosphate synthase
    DXP synthase
    transketolase 2
    NP_001385272.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398343.1 → NP_001385272.1  1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      JW084898
      Conserved Domains (1) summary
      PLN02582
      Location:48 → 719
      PLN02582; 1-deoxy-D-xylulose-5-phosphate synthase

    RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCD10Xv1.1 Primary Assembly

    Genomic

    1. NC_061111.1 Reference UCD10Xv1.1 Primary Assembly

      Range
      180765437..180770616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O78328.1 GenPept UniProtKB/Swiss-Prot:O78328

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases