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    LOC107770932 squamosa promoter-binding-like protein 6 [ Nicotiana tabacum (common tobacco) ]

    Gene ID: 107770932, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC107770932
    Gene description
    squamosa promoter-binding-like protein 6
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nicotiana tabacum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
    Also known as
    NtabSPL6-5
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    Genomic context

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    See LOC107770932 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015891042.1 (3527..10030, complement)

    NW_015891042.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015891042.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Han YY, et al. Dev Genes Evol, 2016 Jan. PMID 26635304
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 6
    Names
    squamosa promoter binding protein NtabSPL6-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001325085.1 → NP_001312014.1  squamosa promoter-binding-like protein 6

      Status: PROVISIONAL

      Source sequence(s)
      LC073293
      UniProtKB/TrEMBL
      A0A125SZN2, A0A240EUQ8
      Conserved Domains (1) summary
      pfam03110
      Location:163 → 237
      SBP; SBP domain

    RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ntab-TN90 Primary Assembly

    Genomic

    1. NW_015891042.1 Reference Ntab-TN90 Primary Assembly

      Range
      3527..10030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016590259.1 → XP_016445745.1  squamosa promoter-binding-like protein 6

      UniProtKB/TrEMBL
      A0A125SZN2, A0A240EUQ8
      Conserved Domains (1) summary
      pfam03110
      Location:163 → 237
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version

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