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    LOC107752152 sodium-dependent serotonin transporter-like [ Sinocyclocheilus rhinocerous ]

    Gene ID: 107752152, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC107752152
    Gene description
    sodium-dependent serotonin transporter-like
    See related
    Ensembl:ENSSRHG00000044341
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sinocyclocheilus rhinocerous
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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    Genomic context

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    See LOC107752152 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current SAMN03320098_v1.1 (GCF_001515625.1) Unplaced Scaffold NW_015639805.1 (659139..669270, complement)

    NW_015639805.1Genomic Context describing neighboring genes Neighboring gene ARF GTPase-activating protein GIT2-like Neighboring gene ankyrin repeat domain-containing protein 13A-like Neighboring gene small G protein signaling modulator 1-like Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial-like Neighboring gene transfer RNA lysine (anticodon UUU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015639805.1 Unplaced Scaffold Reference SAMN03320098_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serotonin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serotonin:sodium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in serotonin uptake IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium-dependent serotonin transporter-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sinocyclocheilus rhinocerous Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SAMN03320098_v1.1 Primary Assembly

    Genomic

    1. NW_015639805.1 Reference SAMN03320098_v1.1 Primary Assembly

      Range
      659139..669270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016568040.1 → XP_016423526.1  sodium-dependent serotonin transporter-like

      UniProtKB/TrEMBL
      A0A673MJI0
      Related
      ENSSRHP00000089736.1, ENSSRHT00000092159.1
    Nucleotide Protein
    Heading Accession and Version

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