U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC107657873 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like [ Sinocyclocheilus anshuiensis ]

    Gene ID: 107657873, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107657873
    Gene description
    alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like
    See related
    Ensembl:ENSSANG00000030447
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sinocyclocheilus anshuiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC107657873 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015549584.1 (1648489..1680815, complement)

    NW_015549584.1Genomic Context describing neighboring genes Neighboring gene protein kinase C zeta Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene choline transporter-like protein 5-B Neighboring gene LIM/homeobox protein Lhx8-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_015549584.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ganglioside biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oligosaccharide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Genomic

    1. NW_015549584.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

      Range
      1648489..1680815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016446154.1 → XP_016301640.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like isoform X2

      UniProtKB/TrEMBL
      A0A671PXI0
      Related
      ENSSANP00000060950.1, ENSSANT00000064826.1

    2. XM_016446153.1 → XP_016301639.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like isoform X1

      UniProtKB/TrEMBL
      A0A671PP92
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases