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    LOC107494301 transcription factor MYB60 [ Arachis duranensis ]

    Gene ID: 107494301, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC107494301
    Gene description
    transcription factor MYB60
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arachis duranensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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    Genomic context

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    See LOC107494301 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_02 current aradu.V14167.gnm2.J7QH (GCF_000817695.3) 6 NC_029777.3 (82150622..82152386)
    101 previous assembly Aradu1.1 (GCF_000817695.2) A06 NC_029777.2 (84300951..84302533)

    Chromosome 6 - NC_029777.3Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene F-box protein SKIP24 Neighboring gene small nucleolar RNA R71 Neighboring gene S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYB60

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000817695.3-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aradu.V14167.gnm2.J7QH Primary Assembly

    Genomic

    1. NC_029777.3 Reference aradu.V14167.gnm2.J7QH Primary Assembly

      Range
      82150622..82152386
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016115359.3 → XP_015970845.1  transcription factor MYB60

      UniProtKB/TrEMBL
      A0A6P4DXU0
      Conserved Domains (2) summary
      smart00717
      Location:14 → 63
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:14 → 61
      Myb_DNA-binding; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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