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    LOC107406275 caffeoylshikimate esterase [ Ziziphus jujuba (common jujube) ]

    Gene ID: 107406275, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC107406275
    Gene description
    caffeoylshikimate esterase
    Locus tag
    FEM48_Zijuj01G0148500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ziziphus jujuba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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    Genomic context

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    See LOC107406275 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ASM3175591v1 (GCF_031755915.1) 1 NC_083379.1 (20673154..20674695, complement)
    101 previous assembly ZizJuj_1.1 (GCF_000826755.1) Unplaced Scaffold NW_015454157.1 (24337..25943, complement)

    Chromosome 1 - NC_083379.1Genomic Context describing neighboring genes Neighboring gene protein GID8 homolog Neighboring gene helicase-like transcription factor CHR28 Neighboring gene serine carboxypeptidase-like 31 Neighboring gene (E,E)-geranyllinalool synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoylshikimate esterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031755915.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3175591v1 Primary Assembly

    Genomic

    1. NC_083379.1 Reference ASM3175591v1 Primary Assembly

      Range
      20673154..20674695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025069400.3 → XP_024925168.1  caffeoylshikimate esterase

      UniProtKB/TrEMBL
      A0A6P6FTK7, A0A978W1W6
      Conserved Domains (1) summary
      PLN02298
      Location:1 → 317
      PLN02298; hydrolase, alpha/beta fold family protein
    Nucleotide Protein
    Heading Accession and Version

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