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    LOC107278121 germin-like protein 3-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107278121, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC107278121
    Gene description
    germin-like protein 3-1
    Locus tag
    OSNPB_030179100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_009284
    Expression
    Ubiquitous expression in flowers (RPKM 4.1), roots before flowering (RPKM 3.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4167846..4168999)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4157200..4158516)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331817 Neighboring gene uncharacterized LOC4331818 Neighboring gene uncharacterized LOC4331821 Neighboring gene uncharacterized LOC9272394 Neighboring gene uncharacterized LOC136355596

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    germin-like protein 3-1
    Names
    LOC_Os03g08150
    OSJNBa0050H14.9
    Os03g0179100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4167846..4168999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777812.3 → XP_015633298.1  germin-like protein 3-1

      UniProtKB/Swiss-Prot
      A0A0P0VU11, Q8H021
      UniProtKB/TrEMBL
      A2XD64
      Conserved Domains (1) summary
      cd02241
      Location:23 → 222
      cupin_OxOx; Oxalate oxidase (germin), cupin domain

    2. XM_015777813.3 → XP_015633299.1  germin-like protein 3-1

      UniProtKB/Swiss-Prot
      A0A0P0VU11, Q8H021
      UniProtKB/TrEMBL
      A2XD64
      Conserved Domains (1) summary
      cd02241
      Location:23 → 222
      cupin_OxOx; Oxalate oxidase (germin), cupin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H021.1 GenPept UniProtKB/Swiss-Prot:Q8H021

    Gene LinkOut

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