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    LOC107276775 light-inducible protein CPRF2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107276775, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC107276775
    Gene description
    light-inducible protein CPRF2
    Locus tag
    OSNPB_120601800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC107276775 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26043264..26048990)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25330640..25336574)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA30-like Neighboring gene auxin-responsive protein IAA31-like Neighboring gene ethylene-responsive transcription factor 1-like Neighboring gene ethylene-responsive transcription factor ERF003-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    light-inducible protein CPRF2
    Names
    Os12g0601800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26043264..26048990
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765335.3 → XP_015620821.1  light-inducible protein CPRF2 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XUP3, A2ZMF4, A3CJ62, Q2QMJ7
      Conserved Domains (2) summary
      cd14702
      Location:117 → 167
      bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain
      pfam12498
      Location:183 → 279
      bZIP_C; Basic leucine-zipper C terminal

    2. XM_015765336.3 → XP_015620822.1  light-inducible protein CPRF2 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KUB6, A2ZMF4
      Conserved Domains (3) summary
      cd14702
      Location:83 → 133
      bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain
      pfam02724
      Location:49 → 109
      CDC45; CDC45-like protein
      pfam12498
      Location:149 → 245
      bZIP_C; Basic leucine-zipper C terminal
    Nucleotide Protein
    Heading Accession and Version

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