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    LOC107276423 hydroxyproline O-galactosyltransferase GALT2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107276423, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC107276423
    Gene description
    hydroxyproline O-galactosyltransferase GALT2
    Locus tag
    OSNPB_120613850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC107276423 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26732635..26736757)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26016538..26020754)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene remorin 4.1-like Neighboring gene auxin response factor 25-like Neighboring gene mediator of RNA polymerase II transcription subunit 19a Neighboring gene phospholipase A1-II 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hydroxyproline O-galactosyltransferase GALT2
    Names
    Os12g0613850
    probable beta-1,3-galactosyltransferase 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26732635..26736757
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764283.3 → XP_015619769.1  hydroxyproline O-galactosyltransferase GALT2

      UniProtKB/TrEMBL
      B8BMZ9, Q2QM83
      Conserved Domains (1) summary
      PLN03133
      Location:125 → 658
      PLN03133; beta-1,3-galactosyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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