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    CERS5 ceramide synthase 5 [ Parus major (Great Tit) ]

    Gene ID: 107215686, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CERS5
    Gene description
    ceramide synthase 5
    See related
    Ensembl:ENSPMJG00000013252
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parus major
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
    Orthologs
    human mouse all
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    Genomic context

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    See CERS5 in Genome Data Viewer
    Location:
    chromosome: LGE22
    Exon count:
    12
    Annotation release Status Assembly LG Location
    102 current Parus_major1.1 (GCF_001522545.3) LGE22 NC_031798.1 (91268..109866, complement)
    100 previous assembly Parus_major1.0.3 (GCF_001522545.1) Chromosome LGE22 NC_029298.1 (91268..109866, complement)

    Linkage Group LGE22 - NC_031798.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX14 homolog Neighboring gene glycerol-3-phosphate dehydrogenase 1 Neighboring gene LIM domain and actin binding 1 Neighboring gene La ribonucleoprotein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingosine N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ceramide synthase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Parus_major1.1 Primary Assembly

    Genomic

    1. NC_031798.1 Reference Parus_major1.1 Primary Assembly

      Range
      91268..109866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015652060.1 → XP_015507546.1  ceramide synthase 5 isoform X2

      Conserved Domains (2) summary
      cd00086
      Location:52 → 99
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03798
      Location:103 → 296
      TRAM_LAG1_CLN8; TLC domain

    2. XM_015652059.1 → XP_015507545.1  ceramide synthase 5 isoform X1

      Related
      ENSPMJP00000017635.1, ENSPMJT00000023059.1
      Conserved Domains (2) summary
      cd00086
      Location:90 → 137
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03798
      Location:141 → 334
      TRAM_LAG1_CLN8; TLC domain

    RNA

    1. XR_001525201.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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