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    LOC107010507 protein FD [ Solanum pennellii ]

    Gene ID: 107010507, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107010507
    Gene description
    protein FD
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum pennellii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC107010507 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current SPENNV200 (GCF_001406875.1) 2 NC_028638.1 (50819319..50820743)

    Chromosome 2 - NC_028638.1Genomic Context describing neighboring genes Neighboring gene aquaporin PIP2-7-like Neighboring gene U4 spliceosomal RNA Neighboring gene E3 ubiquitin-protein ligase RNF13-like Neighboring gene transfer RNA glutamic acid (anticodon UUC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028638.1 Chromosome 2 Reference SPENNV200

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SPENNV200

    Genomic

    1. NC_028638.1 Reference SPENNV200

      Range
      50819319..50820743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015209792.2 → XP_015065278.1  protein FD

      Conserved Domains (1) summary
      cd14707
      Location:151 → 198
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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