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    LOC107001665 auxin response factor 18-like [ Solanum pennellii ]

    Gene ID: 107001665, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107001665
    Gene description
    auxin response factor 18-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum pennellii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC107001665 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current SPENNV200 (GCF_001406875.1) 10 NC_028646.1 (82038623..82040588, complement)

    Chromosome 10 - NC_028646.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 5A1 Neighboring gene uncharacterized LOC107001664 Neighboring gene BTB/POZ domain-containing protein At5g03250-like Neighboring gene 29 kDa ribonucleoprotein B, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028646.1 Chromosome 10 Reference SPENNV200

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 18-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SPENNV200

    Genomic

    1. NC_028646.1 Reference SPENNV200

      Range
      82038623..82040588 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015199630.1 → XP_015055116.1  auxin response factor 18-like

      Conserved Domains (2) summary
      pfam02362
      Location:112 → 212
      B3; B3 DNA binding domain
      pfam06507
      Location:272 → 354
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version

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