U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SGCD sarcoglycan delta [ Acinonyx jubatus (cheetah) ]

    Gene ID: 106967632, updated on 13-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SGCD
    Gene description
    sarcoglycan delta
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acinonyx jubatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SGCD in Genome Data Viewer
    Location:
    chromosome: A1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) A1 NC_069380.1 (188221778..189156532, complement)

    Chromosome A1 - NC_069380.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC113594937 Neighboring gene ATP synthase subunit f, mitochondrial-like Neighboring gene methylosome subunit pICln-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_069380.1 Chromosome A1 Reference VMU_Ajub_asm_v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VMU_Ajub_asm_v1.0

    Genomic

    1. NC_069380.1 Reference VMU_Ajub_asm_v1.0

      Range
      188221778..189156532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027077705.2 → XP_026933506.2  delta-sarcoglycan isoform X1

    2. XM_053199779.1 → XP_053055754.1  delta-sarcoglycan isoform X1

    3. XM_027077715.2 → XP_026933516.2  delta-sarcoglycan isoform X1

    4. XM_027077719.2 → XP_026933520.2  delta-sarcoglycan isoform X2

    5. XM_015063901.3 → XP_014919387.2  delta-sarcoglycan isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.