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    hcfc1a host cell factor C1a [ Poecilia latipinna (sailfin molly) ]

    Gene ID: 106964927, updated on 13-Mar-2024

    Summary

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    Gene symbol
    hcfc1a
    Gene description
    host cell factor C1a
    See related
    Ensembl:ENSPLAG00000019703
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poecilia latipinna
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
    Also known as
    hcfc1
    Orthologs
    zebrafish all
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    Genomic context

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    See hcfc1a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114353.1 (30712..46607)

    NW_015114353.1Genomic Context describing neighboring genes Neighboring gene blue-sensitive opsin Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene uncharacterized LOC106964934 Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC106964936

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015114353.1 Unplaced Scaffold Reference P_latipinna-1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor 1
    Names
    host cell factor C1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P_latipinna-1.0

    Genomic

    1. NW_015114353.1 Reference P_latipinna-1.0

      Range
      30712..46607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015060720.1 → XP_014916206.1  host cell factor 1

      UniProtKB/TrEMBL
      A0A3B3UQS4
      Related
      ENSPLAP00000015730.1, ENSPLAT00000024514.1
      Conserved Domains (5) summary
      PLN02153
      Location:16 → 334
      PLN02153; epithiospecifier protein
      cd00063
      Location:1504 → 1533
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:201 → 254
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:33 → 70
      Kelch_1; Kelch motif
      pfam13415
      Location:216 → 264
      Kelch_3; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version

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