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    CAPRIN1 cell cycle associated protein 1 [ Calidris pugnax (ruff) ]

    Gene ID: 106891991, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CAPRIN1
    Gene description
    cell cycle associated protein 1
    See related
    Ensembl:ENSCPUG00000001592
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See CAPRIN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090901.1 (1685240..1722387)

    NW_015090901.1Genomic Context describing neighboring genes Neighboring gene rhombotin-2 Neighboring gene rhombotin-2-like Neighboring gene N-acetyltransferase 10 Neighboring gene ankyrin repeat and BTB domain containing 2 Neighboring gene catalase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015090901.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caprin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015090901.1 Reference ASM143184v1

      Range
      1685240..1722387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014948840.1 → XP_014804326.1  caprin-1 isoform X1

      Related
      ENSCPUP00000002073.1, ENSCPUT00000002497.1
      Conserved Domains (1) summary
      pfam12287
      Location:361 → 675
      Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

    2. XM_014948844.1 → XP_014804330.1  caprin-1 isoform X3

      Conserved Domains (1) summary
      pfam12287
      Location:361 → 638
      Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

    3. XM_014948843.1 → XP_014804329.1  caprin-1 isoform X2

      Conserved Domains (1) summary
      pfam12287
      Location:332 → 646
      Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

    4. XM_014948841.1 → XP_014804327.1  caprin-1 isoform X1

      Conserved Domains (1) summary
      pfam12287
      Location:361 → 675
      Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    Nucleotide Protein
    Heading Accession and Version

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