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    LOC106877216 cobalamin trafficking protein CblD [ Octopus bimaculoides (California two-spot octopus) ]

    Gene ID: 106877216, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC106877216
    Gene description
    cobalamin trafficking protein CblD
    Locus tag
    OCBIM_22034383mg
    See related
    EnsemblRapid:LOC106877216
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octopus bimaculoides
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
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    Genomic context

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    See LOC106877216 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_01 current ASM119413v2 (GCF_001194135.2) 27 NC_069007.1 (16750308..16796516, complement)
    100 previous assembly Octopus_bimaculoides_v2_0 (GCF_001194135.1) Unplaced Scaffold NW_014682654.1 (38267..84223)

    Chromosome 27 - NC_069007.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-binding clathrin assembly protein Neighboring gene sepiapterin reductase Neighboring gene acid phosphatase type 7 Neighboring gene protein SPEC3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cobalamin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cobalamin trafficking protein CblD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001194135.2-RS_

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM119413v2 Primary Assembly

    Genomic

    1. NC_069007.1 Reference ASM119413v2 Primary Assembly

      Range
      16750308..16796516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014926072.2 → XP_014781558.1  cobalamin trafficking protein CblD isoform X1

      Related
      XP_014781558.1, XM_014926072.2
      Conserved Domains (1) summary
      pfam10229
      Location:68 → 296
      DUF2246; Uncharacterized conserved protein (DUF2246)

    2. XM_014926073.2 → XP_014781559.1  cobalamin trafficking protein CblD isoform X2

      UniProtKB/TrEMBL
      A0A0L8GFR1
      Related
      XP_014781559.1, XM_014926073.2
      Conserved Domains (1) summary
      pfam10229
      Location:45 → 273
      DUF2246; Uncharacterized conserved protein (DUF2246)
    Nucleotide Protein
    Heading Accession and Version

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