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    galk1 galactokinase 1 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 106578898, updated on 13-Mar-2024

    Summary

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    Gene symbol
    galk1
    Gene description
    galactokinase 1
    See related
    Ensembl:ENSSSAG00000017595
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Orthologs
    human zebrafish all
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    Genomic context

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    See galk1 in Genome Data Viewer
    Location:
    chromosome: ssa19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa19 NC_059460.1 (45618923..45631165)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa19 NC_027318.1 (42109925..42122148)

    Chromosome ssa19 - NC_059460.1Genomic Context describing neighboring genes Neighboring gene pepsin A-like Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene LLGL scribble cell polarity complex component 2 Neighboring gene myosin XVB

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables galactokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in galactose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactokinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059460.1 Reference Ssal_v3.1

      Range
      45618923..45631165
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014158139.2 → XP_014013614.1  galactokinase isoform X1

      UniProtKB/TrEMBL
      A0A1S3NDT8
      Related
      ENSSSAP00000024218.1, ENSSSAT00000031741.2
      Conserved Domains (6) summary
      smart00225
      Location:398 → 487
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG0153
      Location:9 → 362
      GalK; Galactokinase [Carbohydrate transport and metabolism]
      pfam00288
      Location:128 → 194
      GHMP_kinases_N; GHMP kinases N terminal domain
      pfam08544
      Location:291 → 355
      GHMP_kinases_C; GHMP kinases C terminal
      pfam10509
      Location:19 → 67
      GalKase_gal_bdg; Galactokinase galactose-binding signature
      cl02518
      Location:398 → 486
      BTB; BTB/POZ domain

    2. XM_014158140.2 → XP_014013615.1  galactokinase isoform X2

      UniProtKB/TrEMBL
      A0A1S3NEF5
      Related
      ENSSSAP00000024230.1, ENSSSAT00000031810.2
      Conserved Domains (4) summary
      COG0153
      Location:9 → 362
      GalK; Galactokinase [Carbohydrate transport and metabolism]
      pfam00288
      Location:128 → 194
      GHMP_kinases_N; GHMP kinases N terminal domain
      pfam08544
      Location:291 → 355
      GHMP_kinases_C; GHMP kinases C terminal
      pfam10509
      Location:19 → 67
      GalKase_gal_bdg; Galactokinase galactose-binding signature

    3. XM_014158141.2 → XP_014013616.1  galactokinase isoform X3

      UniProtKB/TrEMBL
      A0A1S3NEQ2
      Related
      ENSSSAP00000024205.1, ENSSSAT00000031633.2
      Conserved Domains (4) summary
      COG0153
      Location:9 → 389
      GalK; Galactokinase [Carbohydrate transport and metabolism]
      pfam00288
      Location:128 → 194
      GHMP_kinases_N; GHMP kinases N terminal domain
      pfam08544
      Location:291 → 372
      GHMP_kinases_C; GHMP kinases C terminal
      pfam10509
      Location:19 → 67
      GalKase_gal_bdg; Galactokinase galactose-binding signature
    Nucleotide Protein
    Heading Accession and Version

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