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    LOC106565879 olfactory receptor class A-like protein 1 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 106565879, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC106565879
    Gene description
    olfactory receptor class A-like protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    ora2
    Orthologs
    zebrafish all
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    Genomic context

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    See LOC106565879 in Genome Data Viewer
    Location:
    chromosome: ssa12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (72546387..72547547)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (64370506..64373722)

    Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene protein PHTF1 Neighboring gene olfactory receptor class A-like protein 1 Neighboring gene plexin-A2-like Neighboring gene uncharacterized LOC106565877

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    olfactory receptor class A-like protein 1
    Names
    vomeronasal 1 receptor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059453.1 Reference Ssal_v3.1

      Range
      72546387..72547547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014133515.2 → XP_013988990.2  olfactory receptor class A-like protein 1

      UniProtKB/TrEMBL
      B2BX16
      Conserved Domains (2) summary
      cd14964
      Location:6 → 32
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:6 → 300
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases